[Orechem] Today's phone call

[Jim Downing]

Hi all,

Apologies for not making the meeting, my mac crashed... yes, that's right:
MY MAC .... CRASHED... there, happy? Anyway - by the time it had fscked
itself back to life the meeting was over.

Which is a shame because I had some progress to report! Nick Day has
refactored the publication crawling routines from CrystalEye into standalone
package (called "pub-crawler"), and added the capability to produce ORE ReMs
of journal articles including alternative format renditions, basic metadata
(including DOI) and supporting information. This functionality will
hopefully go live today and the data will be percolating through CrystalEye
over the weekend.

Pub-crawler also gives us the capability to produce ReMs including
supporting information as an overlay to lots of different journals. So far
we've experimented with Nature Chemistry, since they have excellent metadata
support (they have RDFa in their web pages, w00t!), and put a lot of
information into the quality of the SI. This could be a really good stepping
stone to persuading the publishers to support ORE themselves.

Best regards,
jim

2009/6/4 Peter Murray-Rust <pm286 at cam.ac.uk>

> Looking forward to meeting.
>
> P.
>
>
> On Thu, Jun 4, 2009 at 7:44 PM, WILLIAM J BROUWER <wjb19 at psu.edu> wrote:
>
>> Folks;
>>
>> I also apologize for missing the phone meeting...
>>
>> I've finished a paper for docEng09 on molecule/spectra extraction from
>> PostScript, with a plug
>> for Orechem. We have some nice results, I'm very grateful for Peter's
>> input and to
>> Jeremy/Simon for lending me Mark who has greatly extended the parser and
>> upped the accuracy.
>> I've lost access to the Microsoft portal, please let me know if you'd like
>> a copy.
>>
>> Peter et al, can we have a beer next week to decide next steps?
>>
>
> Of course.
>
>
>> As I say, I'd love to see it take
>> off before I leave PSU. Mark has set up a server and we are looking at
>> batching this to provide
>> data for use with structure determination/drug discovery etc.
>>
>> cheers,
>> bill brouwer
>>
>>
>> On Thu, Jun 4, 2009 09:39 AM, *Carl Lagoze <clagoze at gmail.com>* wrote:
>>
>> The main issue for today's phone call is to jointly formulate a non-
>> intrusive but effective project planning & tracking technology.  I'd
>> like us all to show up at PSU with monthly goals planned over the next
>> 6 months and then have one place where we can edit it and share it.
>> I can do this privately in MS project but need advice on a more public
>> method.  My impression is if we dont do this, we are not going to make
>> the progress we need to make.
>>
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>>
>>
>>
>>
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>
>
> --
> Peter Murray-Rust
> Reader in Molecular Informatics
> Unilever Centre, Dep. Of Chemistry
> University of Cambridge
> CB2 1EW, UK
> +44-1223-763069
>
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