It seems Mark's reply didn't reach the list, perhaps because his mib104 address isn't in the posters whitelist?<br><br>jim<br><br><div class="gmail_quote">---------- Forwarded message ----------<br>From: <b class="gmail_sendername">Mark Borkum</b> <span dir="ltr"><<a href="mailto:mib104@soton.ac.uk">mib104@soton.ac.uk</a>></span><br>
Date: 29 April 2010 12:02<br>Subject: Re: How should we model CrystalEye CIFS in OREChem Ontology?<br>To: Jim Downing <<a href="mailto:ojd20@cam.ac.uk">ojd20@cam.ac.uk</a>><br>Cc: "<a href="mailto:orechem@openarchives.org">orechem@openarchives.org</a>" <<a href="mailto:orechem@openarchives.org">orechem@openarchives.org</a>><br>
<br><br>Hi Jim,<br>
<br>
The CIF files should be modelled as instances of File (a subclass of ExperimentObject). Currently, there is no "best practice" for how to link back to the original file (in eCrystals, we use the dc:identifier property.)<br>
<br>
You guessed correctly. The HTML document for the summary/moiety page should link to the instance of ExperimentRun using a <link> tag:<br>
<link rel="alternate" href="..." title="oreChem" type="application/rdf+xml" /><br>
<br>
Regards,<br>
Mark<br>
<br>
P.S: Assuming that your semantifiers are written using Lensfield: Would it be possible to generate the ExperimentRun as a side-effect of executing the Lensfield build structure?<div><div></div><div class="h5"><br>
<br>
<br>
Jim Downing wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Hi Mark,<br>
<br>
We're revising our crystallographic semantifiers. How should we model the CIF files CrystalEye has?<br>
<br>
I'm guessing that there is an implicit Xray crystallographic experiment that is an instance of ExperimentRun, that emits the CIF that is an ExperimentObject?<br>
<br>
Is this right?<br>
<br>
Cheers,<br>
jim<br>
<br>
------------------<br>
<br>
P.S. I am leaving the University (and the HE sector) at the end of May. If we need to meet or talk to hand over information or contacts and I haven't been in touch with you to arrange it, please get in touch with me! Thanks, jim<br>
</blockquote></div></div>
-- <br>
Mark Borkum<br>
Postgraduate Researcher<br>
<br>
School of Chemistry<br>
University of Southampton<br>
University Road<br>
Southampton, SO17 1BJ<br>
United Kingdom<br>
<br>
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<br>
+44 (0)2380 594676 (office)<br>
<a href="mailto:m.i.borkum@soton.ac.uk" target="_blank">m.i.borkum@soton.ac.uk</a><br>
<br>
</div><br><br clear="all"><br>-- <br>------------------<br><br>P.S. I am leaving the University (and the HE sector) at the end of May. If we need to meet or talk to hand over information or contacts and I haven't been in touch with you to arrange it, please get in touch with me! Thanks, jim<br>