[Orechem] Example CrystalEye feed

Carl Lagoze clagoze at gmail.com
Sun Nov 22 11:00:12 EST 2009


On Nov 21, 2009, at 6:39 AM, Jim Downing wrote:

> Hi Peter, all,
> 
> 2009/11/20 Peter Murray-Rust <pm286 at cam.ac.uk>:
>> On Fri, Nov 20, 2009 at 4:31 PM, Nick Day <ned24 at cam.ac.uk> wrote:
>>> Jim and I have created an example Atom archive feed at:
>>> 
>>> http://wwmm.ch.cam.ac.uk/crystaleye/feed/orechem/feed.xml
>>> 
>>> where each entry describes a molecular moiety from an issue of Acta
>>> Crystallographica Section C.  Any comments are most welcome.
>>> 
>> The feed per se resolves in my browsers by default to the Acta Cryst page,
>> not to the moiety, though the moiety is also referenced in the feed. You
>> might want to add a word or two of explanation of the various URIs in the
>> feed.
> 
> Isn't the ORE Atom self evident? ;-)
> 
> I'd like to add a clear "main data file is here" link comment.
> 
> What's the recommended way of getting the RDF representation of an
> oreatom:entry? Con-neg or another link at rel='alternate'?

I'm confused about your question here.  You can translate to the RDF/XML translation of the feed via the grddl at http://www.openarchives.org/ore/atom-grddl.xsl.

Carl

> 
>> Is this in a state where IU can start ingesting molecules?
> 
> Yes, absolutely. In a sense we'd be building the distributed workflow
> from the back - in future we'll link from named entities in the
> documents to these crystaleye moieties.
> 
> jim
> 
>> P.
>> 
>> 
>>> 
>>> cheers,
>>> Nick
>>> 
>>> _______________________________________________
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>>> Orechem at openarchives.org
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>>> 
>> 
>> 
>> 
>> --
>> Peter Murray-Rust
>> Reader in Molecular Informatics
>> Unilever Centre, Dep. Of Chemistry
>> University of Cambridge
>> CB2 1EW, UK
>> +44-1223-763069
>> 
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>> 
> 
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